Package: hidecan 1.2.0.0
Olivia Angelin-Bonnet
hidecan: Create HIDECAN Plots for Visualising Genome-Wide Association Studies and Differential Expression Results
Generates HIDECAN plots that summarise and combine the results of QTL mapping, genome-wide association studies (GWAS) and transcriptomics differential expression analyses (DE), along with manually curated candidate genes of interest. The HIDECAN plot is presented in Angelin-Bonnet, O., Vignes, M., Biggs, P. J., Baldwin, S., & Thomson, S. (2024). Visual Integration of Genome-Wide Association Studies and Differential Expression Results with the Hidecan R Package. Genes, 15(10), 1244.
Authors:
hidecan_1.2.0.0.tar.gz
hidecan_1.2.0.0.zip(r-4.7)hidecan_1.2.0.0.zip(r-4.6)hidecan_1.2.0.0.zip(r-4.5)
hidecan_1.2.0.0.tgz(r-4.6-any)hidecan_1.2.0.0.tgz(r-4.5-any)
hidecan_1.2.0.0.tar.gz(r-4.7-any)hidecan_1.2.0.0.tar.gz(r-4.6-any)
hidecan_1.2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
hidecan/json (API)
NEWS
| # Install 'hidecan' in R: |
| install.packages('hidecan', repos = c('https://plantandfoodresearch.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/plantandfoodresearch/hidecan/issues
Pkgdown/docs site:https://plantandfoodresearch.github.io
Last updated from:bba89676b4. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 145 | ||
| source / vignettes | OK | 172 | ||
| linux-release-x86_64 | OK | 181 | ||
| macos-release-arm64 | OK | 141 | ||
| macos-oldrel-arm64 | OK | 194 | ||
| windows-devel | OK | 92 | ||
| windows-release | OK | 90 | ||
| windows-oldrel | OK | 92 | ||
| wasm-release | OK | 133 |
Exports:.compute_chrom_length_genes.compute_chrom_length_markersapply_thresholdCAN_datacombine_chrom_lengthcompute_chrom_lengthcreate_hidecan_plotCUSTOM_dataDE_dataget_example_dataGWAS_dataGWAS_data_from_gwaspolyhidecan_aeshidecan_plothidecan_plot_from_gwaspolymanhattan_plotQTL_datarun_hidecan_shiny
Dependencies:base64encbitbit64bslibcachemclicommonmarkcpp11crayondigestdplyrfarverfastmapfontawesomefsgenericsggnewscaleggplot2ggrepelgluegridExtragtablehmshtmltoolshttpuvisobandjquerylibjsonlitelabelinglaterlifecyclemagrittrmemoisemimeotelpillarpkgconfigprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcpprlangS7sassscalesshinysourcetoolsstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisviridisLitevroomwithrxtable
