Package: hidecan 1.1.0.9000
hidecan: Create HIDECAN Plots for Visualising Genome-Wide Association Studies and Differential Expression Results
Generates HIDECAN plots that summarise and combine the results of genome-wide association studies (GWAS) and transcriptomics differential expression analyses (DE), along with manually curated candidate genes of interest. The HIDECAN plot is presented in: Angelin-Bonnet, O., Vignes, M., Biggs, P. J., Baldwin, S., & Thomson, S. (2023). Visual integration of GWAS and differential expression results with the hidecan R package. bioRxiv, 2023-03.
Authors:
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hidecan.pdf |hidecan.html✨
hidecan/json (API)
NEWS
# Install 'hidecan' in R: |
install.packages('hidecan', repos = c('https://plantandfoodresearch.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/plantandfoodresearch/hidecan/issues
Last updated 2 months agofrom:ee0d6a100b. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 17 2024 |
R-4.5-win | OK | Nov 17 2024 |
R-4.5-linux | OK | Nov 17 2024 |
R-4.4-win | OK | Nov 17 2024 |
R-4.4-mac | OK | Nov 17 2024 |
R-4.3-win | OK | Nov 17 2024 |
R-4.3-mac | OK | Nov 17 2024 |
Exports:.compute_chrom_length_genes.compute_chrom_length_markersapply_thresholdCAN_datacombine_chrom_lengthcompute_chrom_lengthcreate_hidecan_plotCUSTOM_dataDE_dataget_example_dataGWAS_dataGWAS_data_from_gwaspolyhidecan_aeshidecan_plothidecan_plot_from_gwaspolymanhattan_plotrun_hidecan_shiny
Dependencies:base64encbitbit64bslibcachemclicolorspacecommonmarkcpp11crayondigestdplyrfansifarverfastmapfontawesomefsgenericsggnewscaleggplot2ggrepelgluegridExtragtablehmshtmltoolshttpuvisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcpprlangsassscalesshinysourcetoolsstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisviridisLitevroomwithrxtable